Disease cohort comparison
Use this workflow to compare immune profiles across disease contexts.
Supported context fields
- disease label
- disease activity score
- medication
- timepoint
- vaccination or infection history
- treatment condition
- response label
Suggested path
- Register a study with disease context and cohort label.
- Run composition and annotation first.
- Run
disease_workflows. - Review trajectory axis, spatial niches, TLS-like regions, proximity, and composition comparison.
- Generate report outputs for methods and provenance.
Presets
The workflow includes presets for autoimmune, infectious disease, allergy/atopy, and immunotherapy response contexts.