Study workflow

The Immunology study page is the operational center for analysis.

Main sections

Section	Purpose
Study summary	Study metadata, disease context, organism, and cohort label
Analysis panels	Launch and inspect pipeline outputs
Dataset list	Registered datasets for the study
Run history	Completed, running, and failed run records

Recommended order

1. Create the study.
2. Add dataset records.
3. Run immune composition or annotation first.
4. Add repertoire, communication, disease workflow, or multi-modal analyses as relevant.
5. Generate interpretation and report outputs once scientific runs are complete.

App routes

/areas/immunology/dashboard
/areas/immunology/studies
/areas/immunology/studies/new
/areas/immunology/studies/{study_id}

API routes

Metadata routes live under backend:

GET  /immunology/studies
POST /immunology/studies
GET  /immunology/studies/{study_id}
GET  /immunology/studies/{study_id}/datasets
GET  /immunology/studies/{study_id}/runs

Analysis routes live under backend-analysis:

GET  /immunology/pipelines
POST /immunology/run/{pipeline}
GET  /immunology/jobs/{run_id}