Runs and reproducibility

Every Immunology analysis writes a run record and an artifact.

Run record fields

Field	Purpose
id	Run ID used for citations and artifact paths
study_id	Parent study
dataset_id	Optional dataset link
pipeline_name	Pipeline identifier
parameters	Submitted parameter JSON
platform_version	Pipeline/platform version
status	running, complete, or failed
result	Result JSON summary
artifact_path	Output artifact path

Artifact paths

Artifacts are written under:

data/immunology/artifacts/{run_id}/

Provenance

Interpretation writes:

• interpretation.json
• interpret_context.json
• interpret_audit.json

Reports write:

• report.json

Report artifacts include methods text, summary tables, figure specs, and a provenance manifest of source runs.